Browsing by Subject "optical tomography"
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Item Adaptive finite element methods for fluorescence enhanced optical tomography(Texas A&M University, 2006-10-30) Joshi, AmitFluorescence enhanced optical tomography is a promising molecular imaging modality which employs a near infrared fluorescent molecule as an imaging agent and time-dependent measurements of fluorescent light propagation and generation. In this dissertation a novel fluorescence tomography algorithm is proposed to reconstruct images of targets contrasted by fluorescence within the tissues from boundary fluorescence emission measurements. An adaptive finite element based reconstruction algorithm for high resolution, fluorescence tomography was developed and validated with non-contact, planewave frequency-domain fluorescence measurements on a tissue phantom. The image reconstruction problem was posed as an optimization problem in which the fluorescence optical property map which minimized the difference between the experimentally observed boundary fluorescence and that predicted from the diffusion model was sought. A regularized Gauss-Newton algorithm was derived and dual adaptive meshes were employed for solution of coupled photon diffusion equations and for updating the fluorescence optical property map in the tissue phantom. The algorithm was developed in a continuous function space setting in a mesh independent manner. This allowed the meshes to adapt during the tomography process to yield high resolution images of fluorescent targets and to accurately simulate the light propagation in tissue phantoms from area-illumination. Frequency-domain fluorescence data collected at the illumination surface was used for reconstructing the fluorescence yield distribution in a 512 cm3, tissue phantom filled with 1% Liposyn solution. Fluorescent targets containing 1 micro-molar Indocyanine Green solution in 1% Liposyn and were suspended at the depths of up to 2cm from the illumination surface. Fluorescence measurements at the illumination surface were acquired by a gain-modulated image intensified CCD camera system outfitted with holographic band rejection and optical band pass filters. Excitation light at the phantom surface source was quantified by utilizing cross polarizers. Rayleigh resolution studies to determine the minimum detectable sepatation of two embedded fluorescent targets was attempted and in the absence of measurement noise, resolution down to the transport limit of 1mm was attained. The results of this work demonstrate the feasibility of high-resolution, molecular tomography in clinic with rapid non-contact area measurements.Item Development of a radiative transport based, fluorescence-enhanced, frequency-domain small animal imaging system(2009-05-15) Rasmussen, John C.Herein we present the development of a fluorescence-enhanced, frequency-domain radiative transport reconstruction system designed for small animal optical tomography. The system includes a time-dependent data acquisition instrument, a radiative transport based forward model for prediction of time-dependent propagation of photons in small, non-diffuse volumes, and an algorithm which utilizes the forward model to reconstruct fluorescent yields from air/tissue boundary measurements. The major components of the instrumentation include a charge coupled device camera, an image intensifier, signal generators, and an optical switch. Time-dependent data were obtained in the frequency-domain using homodyne techniques on phantoms with 0.2% to 3% intralipid solutions. Through collaboration with Transpire, Inc., a fluorescence-enhanced, frequency-domain, radiative transport equation (RTE) solver was developed. This solver incorporates the discrete ordinates, source iteration with diffusion synthetic acceleration, and linear discontinuous finite element differencing schemes, to predict accurately the fluence of excitation and emission photons in diffuse and transport limited systems. Additional techniques such as the first scattered distributed source method and integral transport theory are used to model the numerical apertures of fiber optic sources and detectors. The accuracy of the RTE solver was validated against diffusion and Monte Carlo predictions and experimental data. The comparisons were favorable in both the diffusion and transport limits, with average errors of the RTE predictions, as compared to experimental data, typically being less than 8% in amplitude and 7% in phase. These average errors are similar to those of the Monte Carlo and diffusion predictions. Synthetic data from a virtual mouse were used to demonstrate the feasibility of using the RTE solver for reconstructing fluorescent heterogeneities in small, non-diffuse volumes. The current version of the RTE solver limits the reconstruction to one iteration and the reconstruction of marginally diffuse, frequency-domain experimental data using RTE was not successful. Multiple iterations using a diffusion solver successfully reconstructed the fluorescent heterogeneities, indicating that, when available, multiple iterations of the RTE based solver should also reconstruct the heterogeneities.Item Fluorescence enhanced optical tomography on breast phantoms with measurements using a gain modulated intensified CCD imaging system(Texas A&M University, 2005-08-29) Godavarty, AnuradhaFluorescence-enhanced optical imaging using near-infrared (NIR) light developed for in-vivo molecular targeting and reporting of cancer provides promising opportunities for diagnostic imaging. However, prior to the administration of unproven contrast agents, the benefits of fluorescence-enhanced optical imaging must be assessed in feasibility phantom studies. A novel intensified charge-coupled device (ICCD) imaging system has been developed to perform 3-D fluorescence tomographic imaging in the frequency-domain using near-infrared contrast agents. This study is unique since it (i) employs a large tissue-mimicking phantom (~1087 cc), which is shaped and sized to resemble a female breast and part of the extended chest wall region, and (ii) enables rapid data acquisition in the frequency-domain by using a gain-modulated ICCD camera. Diagnostic 3-D fluorescence-enhanced optical tomography is demonstrated using 0.5-1 cc single and multiple targets contrasted from their surrounding by ??M concentrations of Indocyanine green (ICG) in the breast-shaped phantom (10 cm diameter), under varying conditions of target-to-background absorption contrast ratios (1:0 and 100:1) and target depths (up to 3 cm deep). Boundary surface fluorescence measurements of referenced amplitude and phase shift were used along with the coupled diffusion equation of light propagation in order to perform 3-D image reconstructions using the approximate extended Kalman filter (AEKF) algorithm, and hence differentiate the target from the background based on fluorescent optical contrast. Detection of single and multiple targets is demonstrated under various conditions of target depths (up to 2 cm deep), absorption optical contrast ratio (1:0 and 100:1), target volumes (0.5-1 cc), and multiple targets (up to three 0.5 cc targets). The feasibility of 3-D image reconstructions from simultaneous multiple point excitation sources are presented. Preliminary lifetime imaging studies with 1:2 and 2:1 optical contrast in fluorescence lifetime of the contrast agents is also demonstrated. The specificity of the optical imager is further assessed from homogeneous phantom studies containing no fluorescently contrasted targets. While nuclear imaging currently provides clinical diagnostic opportunities using radioactive tracers, molecular targeting of tumors using non-ionizing NIR contrast agents tomographically imaged using the frequency-domain ICCD imaging system could possibly become a new method of diagnostic imaging.Item Imaging Heterogeneous Objects Using Transport Theory and Newton's Method(2012-02-14) Fredette, NathanielThis thesis explores the inverse problem of optical tomography applied to two-dimensional heterogeneous domains. The neutral particle transport equation was used as the forward model to simulate how neutral particles stream through and interact within these heterogeneous domains. A constrained optimization technique that uses Newton's method served as the basis of the inverse problem. The capabilities and limitations of the presented method were explored through various two-dimensional domains. The major factors that influenced the ability of the optimization method to reconstruct the cross sections of these domains included the locations of the sources used to illuminate the domains, the number of separate experiments used in the reconstruction, the locations where measurements were collected, the optical thickness of the domain, the amount of signal noise and signal bias applied to the measurements, and the initial guess for the cross section distribution. All of these factors were explored for problems with and without scattering. Increasing the number of sources, measurements and experiments used in the reconstruction generally produced more successful reconstructions with less error. Using more sources, experiments and measurements also allowed for optically thicker domains to be reconstructed. The maximum optical thickness that could be reconstructed with this method was ten mean free paths for pure absorber domains and two mean free paths for domains with scattering. Applying signal noise and signal bias to the measured fluxes produced more error in the reconstructed image. Generally, Newton's method was more successful at reconstructing domains from an initial guess for the cross sections that was greater in magnitude than their true values than from an initial guess that was lower in magnitude.