Browsing by Subject "lignin"
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Item Bt vs. non-Bt corn (Zea mays L.) hybrids: effect on degradation of corn stover in soil(2010-07-14) Salvatore, Herminia T.A billion tons per year of genetically modified corn residues are soil incorporated having both direct and indirect effects on the belowground environment, soil carbon (C) sequestration, and nutrient cycling. If Bt genetic modification has non-target effects on corn stover structural/non-structural carbohydrate and nitrogen (N) concentrations, then the degradation rate of Bt-corn stover may be different than that of non-Bt isolines, possibly influencing soil C storage and N mineralization. Thus, this research focused primarily on the comparison of C and N mineralization of corn stover in soil as affected by Bt-trait, plant portion, water-availability and HFC-trait; and secondarily on the existence of Bt-related variations in the chemical structure of corn residues that might affect the degradation rate of stover in soil and consequently the soil C and N dynamics. A laboratory experiment was conducted under non-limiting N conditions with stover of Bt/non-Bt isogenic pairs of two varieties, a ?high fermentable corn? (HFC) line harvested at Snook, Texas and a non-HFC corn line harvested at the irrigated field of Snook and the non-irrigated field of College Station, Texas. The stover was partitioned into three plant portions, incorporated into a Weswood soil and incubated during 223 days. Results showed that the differences observed in the degradation in soil of Bt vs. non-Bt corn stover were dependent on environmental conditions (irrigated vs. non-irrigated settings) and hybrid variety (HFC vs. non-HFC hybrid lines). The structural composition of corn plants was affected by the Bt-trait, HFC-trait, irrigation and their interactions. Variations in the biomass fractions of the initial stover of Bt and non-Bt hybrids had minimum to non-impact on soil C and N concentrations measured at the end of the 223-day incubation period. Lignin concentration was affected by a Bt-trait*variety interaction. There were no significant differences in lignin concentration between non-Bt/Bt-corn derived stovers of the non-HFC variety irrespective of irrigation regime but Bt-hybrids of the HFC variety contained more than twice as much lignin as the non-Bt isogenic plants. The effects of higher lignin concentration on C mineralization rate appeared to be offset by an increased lignin degradability inherent in HFC-trait. Overall, results indicated that the cultivation of Bt-modified maize lines is not likely to have significant effects on soil C or N dynamics compared with the cropping of non-Bt hybrids.Item Dissolved organic matter discharge in the six largest arctic rivers-chemical composition and seasonal variability(2009-05-15) Rinehart, Amanda J.The vulnerability of the Arctic to climate change has been realized due to disproportionately large increases in surface air temperatures which are not uniformly distributed over the seasonal cycle. Effects of this temperature shift are widespread in the Arctic but likely include changes to the hydrological cycle and permafrost thaw, which have implications for the mobilization of organic carbon into rivers. The focus of this research was to describe the seasonal variability of the chemical composition of dissolved organic matter (DOM) in the six largest Arctic rivers (Yukon, Mackenzie, Ob, Yenisei, Lena and Kolyma) using optical properties (UV-Vis Absorbance and Fluorescence) and lignin phenol analysis. We also investigated differences between rivers and how watershed characteristics influence DOM composition. Dissolved organic carbon (DOC) concentrations followed the hydrograph with highest concentrations measured during peak river flow. The chemical composition of peak-flow DOM indicates a dominance of freshly leached material with elevated aromaticity, larger molecular weight, and elevated lignin yields relative to base-flow DOM. During peak flow, soils in the watershed are still frozen and snowmelt water follows a lateral flow path to the river channels. As the soils thaw, surface water penetrates deeper into the soil horizons leading to lower DOC concentrations and likely altered composition of DOM due to sorption and microbial degradation processes. The six rivers studied here shared a similar seasonal pattern and chemical composition. There were, however, large differences between rivers in terms of total carbon discharge reflecting the differences in watershed characteristics such as climate, catchment size, river discharge, soil types, and permafrost distribution. The large rivers (Lena, Yenisei), with a greater proportion of permafrost, exported the greatest amount of carbon. The Kolyma and Mackenzie exported the smallest amount of carbon annually, however, the discharge weighted mean DOC concentration was almost 2-fold higher in the Kolyma, again, indicating the importance of continuous permafrost. The quality and quantity of DOM mobilized into Arctic rivers appears to depend on the relative importance of surface run-off and extent of soil percolation. The relative importance of these is ultimately determined by watershed characteristics.Item Historical Reconstruction of Terrestrial Organic Matter Inputs to Fiordland, NZ Over the Last ~500 Years(2012-10-19) Smith, RichardFjords contain a significant quantity of sediments deposited in coastal zones over the last ~100,000 years. Studies of Northern Hemisphere fjords have shown that a large part of the high concentration of sedimentary organic matter (OMsed) is terrestrial in origin (OMterr), composed of a modern detrital fraction and an old mineral-associated fraction (OMfossil). These results suggest that fjords are disproportionately responsible, on a per area basis, for the burial of organic matter in coastal zones. This study, after a rigorous examination of CuO and GDGT biomarker methods used to quantify terrestrial organic matter in coastal environments, demonstrated this hypothesis in a Southern Hemisphere fjord system, Fiordland, New Zealand. CuO analysis of Doubtful Sound surface sediments indicated a large contribution of vascular plant material to fjord sediments. The BIT Index correlated strongly with both delta13C and C/N values in Doubtful Sound surface sediments, indicated that it may accurately trace the relative proportions of marine and soil organic matter (OMsoil) in Fiordland. However, a detailed analysis of the conversion of the BIT Index to quantitative estimates of terrestrial (soil) organic matter revealed that these values are overestimates. Reconstructions of the BIT Index and tetraethers in cores from two locations on the Louisiana continental shelf demonstrated the influence of the crenarchaeol term on BIT Index-based terrestrial organic matter estimates. The differences in the applicability of the BIT Index to these two coastal environments was most likely due to large seasonal changes in productivity on the Louisiana Continental Shelf as well as higher marine relative to terrestrial inputs. Six cores were reconstructed for contributions from marine OM (OMmar), OMfossil, and OMterrestrial representing the last ~500 years of sedimentation. Spatial variations were larger than temporal variations, owing to negligible development and deforestation in the region. OMterr was the dominant fraction in all but one core, and OMfossil inputs were significant. Additionally, source reconstructions from a variety of biomarkers indicated that Landslides deliver large volumes of detrital organic matter to fjord sediments. These results confirm that fjords bury quantitatively significant volumes of organic carbon on a global scale.Item Introduction and Selection of Photoperiod Sensitive Sorghum Genotypes for Agronomic Fitness and Biomass Composition(2012-10-19) Hoffmann, LeoIn 2007, U.S. Congress created the "Energy Independence and Security Act" with primary goals focused on increasing the knowledge in production of renewable fuels, increasing the percentages of renewable fuels in the transportation sector and decreasing the emissions of greenhouse gases from fossil fuel sources. To achieve these goals, many species have been pointed as sources of feedstock for the biofuel industry. Photoperiod sensitive (PS) biomass sorghum for the lignocellusosic based conversion is one. In this study, three main objectives were addressed regarding the relative performance for biomass yield and biomass composition of PS biomass sorghum. First, genetic and environmental variation effects on the biomass yield and biomass composition, and usefulness of pre-classification of genotypes by biomass lignin content were evaluated. On the set of genotypes and locations tested, the environmental effect had the largest influence on the biomass composition, yield and its components. Although smaller, the genetic variation effect was significant for most of the traits, some traits had significant genotype by environment GXE interaction. The pre-classification of genotypes according to lignin content proved to be an efficient system of separating genotypes as groups, but failed to be efficient in separating on the entries bases. Assessment of growth patterns for biomass yield and composition, characterized photoperiod sensitive sorghum as capable of producing a harvestable crop as soon as 4 months, but variations in the concentration of constituents and moisture percentage, pointed to a harvest window that can be extended up to the 7th month after planting. Genetic variation was observed in this trail for most agronomic and composition traits, but a strong environmental effect was also observed. Lastly, the influence of three diverse cytoplasm male sterility (CMS) systems in biomass sorghum hybrids was assessed. The presence of A1, A2 or A3 CMS in the hybrids tested in this study had no influence on the biomass yield performance or in the biomass composition. Therefore, any of the CMS systems can be used in the production of biomass sorghum hybrid seed. Also, in this trial the environmental effects were significant and strong for most traits evaluated.Item Multi-Proxy Approach on Black Carbon Characterization and Combustion Products Source Discrimination in Environmental Media(2011-02-22) Kuo, Li-JungEnvironmental applications of pyrogenic carbon, aka black carbon (BC), have been hampered due to the poor characterization and quantification of environmental BC. This dissertation was dedicated to the better characterization of environmental char/charcoal BC (char-BC), the most heterogeneous and the less identifiable group in the BC continuum. The analytical approach developed for char-BC was further incorporated with other BC methods in environmental samples for a comprehensive assessment of combustion-derived carbon inputs in different environmental systems. The present study firstly evaluated the feasibility of using levoglucosan, a marker derived from cellulose/hemocellulose combustion, to characterize and quantify char-BC in the environment. Levoglucosan was found exclusively in BC materials derived from biomass combustion albeit in highly variable yields across different char-BC. A further examination of synthetic chars showed that temperature is the most influential factor affecting levoglucosan yield in char. Notably, levoglucosan was only detectable in low temperature char samples (150-350 degrees C), regardless of plant species. These results demonstrated that levoglucosan could serve as a good qualitative indicator for the presence of char produced under low temperature conditions in soil, sediments, and aerosols. Results of lignin analysis on the synthetic chars further reveal that combustion can greatly decrease the yield of the eight major lignin phenols with no lignin phenols detected in any synthetic char produced at greater than or equal to 400 degrees C. The values of all lignin parameters show significant shifts with increasing combustion severity (temperature and/or duration), indicating that thermal alteration is an important abiotic lignin degradation process. Hence the input of char-BC in the environments represents a terrestrial organic matter source with highly altered lignin signatures. Finally, a multi-proxy approach, including elemental (soot-BC) and molecular (levoglucosan, polycyclic aromatic hydrocarbons (PAHs), and lignin oxidation products) proxies, was adopted to investigate the centennial-scale temporal distribution of combustion products in four sediment cores from Puget Sound basins, WA. The observed temporal trends of soot-BC and combustion PAHs fluxes reflect the evolution of energy consumption and the positive effects of environmental regulations. The distinct temporal patterns of soot and PAHs among cores demonstrate that urbanization is a crucial factor controlling the inputs of combustion byproducts to the environment. On the other hand, the trends of levoglucosan may be more relevant to the climate oscillation and thus show a regional distribution pattern. Our results demonstrate that environmental loading of combustion byproducts is a complex function of urbanization and land use, fuel usage, combustion technology, environmental policies, and climate changes.Item Using Sediment Records to Determine Sources, Distribution, Bioavailability, and Potential Toxicity of Dioxins in the Houston Ship Channel: A Multi-proxy Approach(2012-07-16) Seward, Shaya M.Urban centers are major sources of contaminants to the surrounding air, water and soils. Above all, combustion-derived carbonaceous aerosols, especially black carbon (BC) and associated polycyclic aromatic hydrocarbons (PAHs), make significant contributions to the pollution in these systems. Here sedimentary records are used to produce a series of historical reconstructions of such contaminants to the Houston Ship Channel (HSC) system and compare these to point source inputs of hydrophobic organic contaminants (HOC). Analytical data on total organic carbon (TOC), BC, PAHs, dioxins and lignin (likely discarded from a pulp and paper mill along the Channel) were determined. This multi-proxy approach revealed that over the last several decades, HOC inputs to the system have been derived from a complex mixture of combustion processes, industrial point-sources, and oil spills. In particular, widespread dioxin contamination was observed throughout the study region with a particular site of the HSC showing total concentrations over 20,000 pg/g and 5000 pg toxic equivalent (TEQ)/g dry weight of sediment. Using two models based on sorption constants of total OC and BC, porewater concentrations were estimated to be lower than expected, at 20 pg/L and 5 pg TEQ/L. These values, however, are recognized as being extremely high for freely dissolved concentrations in porous media. The pulp and paper waste pit has recently been declared a Superfund site based on dioxin concentrations alone. The relationship between lignin biomarkers and dioxins observed in these sediments confirms that discharges of pulp and paper effluents were responsible for such high dioxin levels. Concentrations of BC, amorphous OC, and TOC were then used to calculate sediment binding of dioxins in sediments of the HSC. Our study found BC to be extremely low in HSC sediments (0.04 to 0.20%) indicating minimal dioxin sorption capacity. This suggests strong potential for fluxes of dioxins from sediments to the water column both through passive diffusion and physical mixing during natural and anthropogenic sediment remobilization events in this shallow system (hurricanes, storms, and dredging). The purposeful addition of BC to these sediments might be promising as a remediation strategy.