Browsing by Subject "disease resistance"
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Item Evaluation of the Dairy/Yeast Prebiotic, Grobiotic-A, in the Diet of Juvenile Nile Tilapia, Oreochromis niloticus(2012-02-14) Peredo, AnjelicaTwo different feeding trials were conducted to evaluate the effects of dietary supplementation with the dairy/yeast prebiotic GroBiotic-A (GBA) to Nile tilapia diets. A nutritionally complete basal diet was supplemented with GBA at either 1 or 2% of dry weight, and all three diets were fed to triplicate groups of juvenile fish in two consecutive trials. Trial 1 continued for 8 weeks, while Trial 2 was conducted for 5 weeks to more specifically assess immunological responses, intestinal characteristics and disease resistance of tilapia. At the conclusion of Trial 1, there were no differences in weight gain (WG) or feed efficiency (FE) among fish fed the three diets. However, fish fed the diet with GBA at 2% had significantly increased survival and noticeably elevated levels of plasma lysozyme compared to fish fed the basal diet or the diet with GBA at 1%. Similarly, at the conclusion of Trial 2, WG and FE were unaffected by GBA supplementation; however, fish fed the diet with GBA at 2% also exhibited elevated plasma lysozyme as well as significantly (P < 0.05) increased levels of extracellular superoxide anion production (EX-SOAP) by macrophages. Dendrogram analysis of denaturing gradient gel electrophoresis (DGGE) images detected a significantly different microbial community within the intestine of fish fed the diet with GBA at 2% compared to fish fed the basal diet and diet with GBA at 1%. None of the experimental diets resulted in significant improvements to survival after exposure to Streptococcus iniae due to within treatment variability. However, fish fed the diet with GBA at 2% did tend to experience reduced mortality (12.5%) as compared to fish fed the basal diet (35%). Thus, supplementation of GBA at 2% of diet did alter the gut microbiota of tilapia and enhanced immunological responses and disease resistance to S. iniae.Item Genetic analyses of bovine CARD15, a putative disease resistance gene(Texas A&M University, 2004-09-30) Taylor, Kristen HawkinsThrough a binding partner the CARD15 gene activates NF-kB, a molecule with a role in the initiation of the inflammatory immune response. The gene is highly conserved in both structure and function in human and mouse and has recently been implicated as a disease resistance gene in Crohn's disease and Blau Syndrome in human. The gene's relationship to disease and its conservation between species suggests that it may also have a conserved role in bovine disease resistance. To elucidate the potential role of bovine CARD15 in disease resistance, the gene was characterized in cattle. Bovine CARD15 is located 4.2 cR5000 telomeric to ADCY7 on chromosome 18. It spans ~30 kb and is comprised of 12 exons, 11 of which are coding. Bovine CARD15 is expressed in many tissues, but is most abundant in peripheral blood leukocytes. An extensive comparative analysis between the bovine, mouse and human CARD15 genes revealed high levels of inter-species conservation in sequence, genomic structure and protein domains. Conserved putative regulatory motifs were identified in the three species comparison of the 5'UTR, 3'UTR and the intronic sequences flanking exons. Additionally, diverse regulatory motifs were identified in each of the species indicating an evolutionary divergence in the mechanisms of regulation of gene expression. To assess the extent of genetic diversity within bovine CARD15, 41 individuals from nine breeds representing two subspecies were sequenced and screened for polymorphisms. Thirty-six single nucleotide polymorphisms (SNPs) were identified including 26 within the gene transcript. Haplotypes were estimated for each individual and parsimonious SNP sets were identified with which the multi-locus Bos taurus and Bos indicus haplotypes may be reconstructed. There was a significantly higher rate of substitutions within Bos indicus than in Bos taurus. A significantly higher rate of nonsynonymous to synonymous substitutions was found in Bos taurus indicating that positive Darwinian selection is acting on the gene within this subspecies. Association analyses were performed between these SNP loci and haplotypes with Johne's disease. No overwhelming evidence for a simple causal relationship was detected. Assays are provided to screen populations of cattle for variation in the CARD15 gene.Item Isolation and characterization of resistance gene analogs (RGAs) in sorghum(Texas A&M University, 2005-08-29) Cho, Jae-MinThe largest group of plant disease resistance (R) genes that share similar structures contains a predicted nucleotide-binding site (NBS) domain. NBS domains of this class of R genes show highly conserved amino acid motifs, which makes it possible to isolate resistance gene analogs (RGAs) by PCR with degenerate primers and homology searches from public databases. Multiple combinations of degenerate primers were designed from three conserved motifs (one motif was used for a subgroup-specific primer design) in the NBS regions of R genes of various plants. All combinations of primer pairs were used to amplify genomic DNA from sorghum. TIR-specific primer combinations showed no PCR amplification in sorghum. Homology searches identified many NBS-encoding sequences among the expressed or genomic molecular database entries for sorghum. Motif analysis of the sorghum NBS sequences that were identified in this study revealed eight major conserved motifs plus two additional highly conserved motifs, but no TIR-specific motifs. Phylogenetic analysis of sorghum NBS sequences showed tree topology typical of NBS-LRR genes, including clustered nodes and longbranch lengths. Eleven distinct families of NBS sequences, representing a highly diverse sample, were isolated from Sorghum bicolor. With two exceptions, sorghum RGA families appeared to be closely related in sequence to at least one R-gene cloned from other species. In addition, deduced amino acid sequences of sorghum RGAs showed strong sequence similarity to almost all known non-TIR (Toll/Interleukin 1 Receptor)- type R-genes. Mapping with sorghum RGA markers revealed one linkage group containing four out of ten randomly selected markers, suggesting non-random distribution of NBS sequences in the sorghum genome. Rice sequences homologous to sorghum NBS sequences were found from two-way BLAST searches. Some of them were shown to be orthologs, when determined by using phylogenetic approaches which combined five different evolution models and tree-building methods.Item The Evaluation of High Tannin Cotton Lines and Their Use in Breeding for Resistance to Xanthomonas axonopodis pv. malvacearum, Pythium aphanidermatum and Rhizoctonia solani(2012-02-14) Kennett, RaymondXanthomonas axonopodis pv. malvacearum(Smith), Pythium aphanidermatum(Edson) and Rhizoctonia solani(Kuhn) have all been shown to cause significant yield losses in cotton. Previous work has demonstrated that a set of high tannin cotton germplasm lines developed and released in 1989 by Texas A&M AgriLife Research may possess resistance to these three diseases. In this research, the usefulness of these high tannin lines in breeding for resistance to these pathogens as well as the role of tannin in conferring this resistance were examined. The high tannin lines were screened for their resistance to Xanthomonas axonopodis pv. malvacearum and five highly resistant lines were subjected to generation means and diallel analysis in order to determine the relative importance of different types of gene action in conferring resistance as well as which lines would be most useful in breeding for resistance. The effect of selection for R. solani resistance was measured and selected lines were subjected to diallel analysis. Lines showing elevated resistant to P. aphanidermatum were subjected to a single cycle of selection and the effect of selection was measured. Lines possessing high degrees of P. aphanidermatum resistance were subjected to generation means and diallel analysis. The importance of tannin content in conferring resistance to X. axonopodis and R. solani was also measured. Four high tannin lines were found to be not different from Tamcot Sphinx in their resistance to Xam. Generation means analysis for Xam resistance showed that in the five high tannin lines tested, additive gene effects were of the greatest importance. No correlation between tannin content and Xam resistance was detected. Under the conditions of this study tannin content was also shown to be unimportant in R. solani resistance. Two rounds of recurrent phenotypic selection were effective in increasing the resistance of selected HT lines to R. solani. One cycle of phenotypic selection for P. aphanidermatum resistance was found to produce significant improvements in seven of the most resistant HT lines. Generation means analysis for P. aphanidermatum resistance showed that in the HT lines tested, additive genetic effects were by far the most important.