Browsing by Subject "Xiphophorus"
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Item Applying mathematical and statistical methods to the investigation of complex biological questions(2013-08) Scarpino, Samuel Vincent; Kirkpatrick, Mark, 1956-; Meyers, Lauren AncelThe research presented in this dissertation integrates data and theory to examine three important topics in biology. In the first chapter, I investigate genetic variation at two loci involved in a genetic incompatibility in the genus Xiphophorus. In this genus, hybrids develop a fatal melanoma due to the interaction of an oncogene and its repressor. Using the genetic variation data from each locus, I fit evolutionary models to test for coevolution between the oncogene and the repressor. The results of this study suggest that the evolutionary trajectory of a microsatellite element in the proximal promoter of the repressor locus is affected by the presence of the oncogene. This study significantly advances our understanding of how loci involved in both a genetic incompatibility and a genetically determined cancer evolve. Chapter two addresses the role polyploidy, or whole genome duplication, has played in generating flowering plant diversity. The question of whether polyploidy events facilitate diversification has received considerable attention among plant and evolutionary biologists. To address this question, I estimated the speciation and genome duplication rates for 60 genera of flowering plants. The results suggest that diploids, as opposed to polyploids, generate more species diversity. This study represents the broadest comparative analysis to date of the effect of polyploidy on flowering plant diversity. In the final chapter, I develop a computational method for designing disease surveillance networks. The method is a data-driven, geographic optimization of surveillance sites. Networks constructed using this method are predicted to significantly outperform existing networks, in terms of information quality, efficiency, and robustness. This work involved the coordinated efforts of researchers in biology, epidemiology, and operations research with public health decision makers. Together, the results of this dissertation demonstrate the utility of applying quantitative theory and statistical methods to data in order to address complex, biological processes.Item Female preference for complex male displays in hybridizing swordtails(2009-05-15) Cress, Zachary PierceSwordtail fishes of the genus Xiphophorus have been studied as a model of sexual selection for many years. Many single-trait manipulation studies have been performed, determining female preferences for individual male traits. I characterized how five traits (standard body length, body depth, dorsal fin width, sword length and vertical bar number) correlate to one another within natural variation of populations of X. birchmanni, X. malinche and three hybrid populations and created synthetic 3- dimensional animations exhibiting these traits within ranges of natural variation. I then performed choice tests on females of the above populations using a computer system that automatically played these stimulus videos and simultaneously tracked a female?s position within a test tank to determine female preference for different male phenotypes. Only X. birchmanni females showed significant preferences. Their preferences were in line with past research of univariate trait manipulation experiments. They showed significant preference for larger bodies and dorsal fins and smaller or no swords. They also showed a non-significant preference for vertical bar numbers. My results also confirmed univariate studies in which X. malinche females showed reduced preference for conspecific males and being rather indifferent to the presence of swords. Hybrid females were also shown to have reduced preferences for any specific trait, suggesting that they express recombinant preferences, which can also be explained by reduced color vision at low levels of light.Item Investigating the female mate preference brain : identifying molecular mechanisms underlying variation in mate preference in specific regions of a swordtail (Xiphophorus nigrensis) brain(2011-05) Wong, Ryan Ying; Hofmann, Hans A.; Cummings, Molly E.; Ryan, Michael J.; Crews, David; Zakon, Harold H.Choosing with whom to mate is one of the most important decisions a female makes in her lifetime and inter-individual variation of these preferences can have important evolutionary consequences. In order to get a complete understanding of why and how females choose a mate, we must identify factors that can contribute to variation of female mate choice. Many decades of research sought to understand ultimate mechanisms of female mate choice with proximate mechanisms receiving a lot more attention in recent years. For my thesis, I identify intrinsic and extrinsic factors that correlate with individual variation of female Xiphophorus nigrensis mate preference. I provide evidence that a female’s size (e.g. age and sexual experience) as well as male behavioral displays can predict female mate preference. Using genes associated with female mate preference (neuroserpin, neurologin-3), I identify four brain regions (Dl, Dm, HV, POA) that show significant differences in gene expression between females exhibiting high preference for males relative to females displaying little mate preference. Neuroserpin and neuroligin-3 gene expression within these brain regions are also positively correlated with female mate preference behavior. Two of these brain regions (Dm and Dl) integrate multisensory information and are found in the putative teleost mesolimbic reward circuitry; the other two regions (HV and POA) are involved in sexual behaviors. With the implication of the reward circuitry, I assess whether there are changes in dopamine synthesis (via tyrosine hydroxylase, TH) in dopaminergic brain regions associated with the degree of mate preference. I do not find evidence of rapid changes (within 30 minutes) of TH expression (i.e. dopamine synthesis) in dopaminergic brain regions related to variation in female mate preference. Collectively my results suggest that mate preference behavior in the brain may be coordinated not just through regions associated with sexual response but also through forebrain areas that may integrate primary sensory information, with no associated changes of a proxy for dopamine synthesis in dopaminergic brain regions.Item Patterns in Teleost Photoreceptor Organization: A Characterization of Basal Body Positioning in Zebrafish Photoreceptors and Variations in Swordtail Photoreceptor Mosaics(2014-04-17) Ramsey, MichelleVertebrate vision is enabled by light-sensitive photoreceptors arranged in a plane in the retina. This study investigates two aspects of this arrangement: 1) positioning of basal bodies within photoreceptors, and 2) positioning of photoreceptors themselves. First, the planar cell polarity of basal bodies, and therefore cilia, is often critical for proper cilia function and is controlled by the planar cell polarity (PCP) pathway. Cilia planar positioning in vertebrate photoreceptors, however, has not been characterized. Because zebrafish photoreceptors form an organized, well-characterized mosaic, they are an ideal system to address photoreceptor basal body positioning. Second, swordtail fish are frequently studied to investigate visually-mediated social behaviors such as mate choice and how these influence evolution. However, less is known about the morphology of their photoreceptor mosaic and how this mosaic influences behavior. Therefore, characterization of the swordtail photoreceptor mosaic is an important step in understanding this relationship between physiology and behavior. In this study, immunohistology is used to characterize cryosectioned flatmounted retinas from zebrafish and swordtails with various genetic, behavioral, and environmental backgrounds. The results of this study reveal that in adult zebrafish retinas, the basal bodies of red-, green-, and blue-sensitive cone photoreceptors localize asymmetrically on the cell edge nearest the optic nerve. In contrast, no patterning is in the basal bodies of ultraviolet-sensitive cones, of rod photoreceptors, or of larval cones. Both rod loss and UV-light addition do not affect cone basal body patterning. Darkness during development leads to bimodality of basal bodies. These results suggest that, after the transition to the adult mosaic, a cellular mechanism involving cell-cell contact, consistent with the PCP pathway, regulates photoreceptor basal body positioning. The results of this study also reveal that the swordtails Xiphophorus malinche, Xiphophorus birchmanni, and their hybrids exhibit an organized square mosaic, although some variations in this pattern exist, including between males and females. As square mosaics have been correlated with sensitivity to changes in light polarization, this warrants future studies in swordtail polarization vision, which may play an important role in visually-mediated behavior. Also, changes in the photoreceptor mosaic might have explanatory power for changes in visually-mediated behavior.Item Sperm competition and the evolution of alternative reproductive tactics in the swordtail Xiphophorus nigrensis (Poeciliidae)(2011-05) Smith, Chad Christopher; Ryan, Michael J. (Michael Joseph), 1953-; Mueller, Ulrich; Juenger, Tom; Bolnick, Daniel; Rosenthal, GilDarwin identified sexual selection as an important evolutionary process resulting from differences among males in their ability to secure mates. In the latter half of the 20th century, it became apparent that females often mate with multiple partners within the same reproductive cycle, leading to the overlap of ejaculates from multiple males and sperm competition for the fertilization of the eggs. Here, I examine how sperm competition has influenced the evolution of Xiphophorus nigrensis, an internally fertilized, livebearing fish with alternative male mating tactics that are dependent upon male size. I find that variation in male tactic is correlated with variation in traits relevant to sperm competition: small males that sneak copulations produce ejaculates with a greater proportion of fertilization-capable sperm (sperm viability) and sperm that is longer-lived following activation compared to large males that court females. Sperm morphology is also divergent between tactics and correlated with sperm performance: smaller males have larger midpieces and midpiece size is positively correlated with sperm velocity and longevity. Social environment also affects ejaculate quality, with sperm velocity rapidly increasing when a small male is exposed to another small male compared to when he is exposed to a large male. Large male ejaculates were invariant across social environments. Next, I demonstrate experimentally that the observed variation in sperm quality has important consequences for the outcome of sperm competition. Males with superior sperm viability sire more offspring, while sperm velocity is negatively associated with sperm competitive ability when sperm are stored within the female prior to fertilization. Finally, I show that sperm competition is likely to have important effects on male reproductive success in the wild by characterizing the genetic mating system of X. nigrensis. I find that 61% of females collected from the Nacimiento Río Choy produce offspring sired by 2-4 males. Paternity is strongly skewed among sires, with an average of 70% of offspring sired by one of the males represented in the brood. These studies illustrate sperm competition can have potent effects on the evolution of animals.