Browsing by Subject "Toll-like receptor"
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Item Diversity and Evolution of the Bovine and Equine Toll-Like Receptor Gene Family: Applications to Animal Disease(2012-08-20) Fisher, Colleen 1988-Genes modulating innate immunity in mammals are generally considered the first line of defense with respect to invading pathogens and therefore it has become important to characterize naturally occurring genetic variation, and subsequently determine whether this variation is likely to be benign, beneficial, or detrimental to the host. Relevant to this study, the mammalian Toll-like receptor proteins (TLR), encoded by members of the TLR gene family, have the capacity to recognize a wide variety of pathogen ligands, and mutations within these genes have been shown to influence disease susceptibility or resistance within mammalian species. Two studies which sought to determine the frequency and distribution of naturally occurring genetic variation within the bovine and equine TLR genes revealed a large number of discrete point mutations, which were subsequently used to reconstruct haplotypes for each investigated gene across a large number of samples. Detailed analyses of haplotypes provided evidence for extensive haplotype sharing among specialized breeds, subspecies, and even divergent species. Classical and new tests of selection provided evidence for significant deviations from a strictly neutral model of molecular evolution for both cattle as well as equids, with some of the same TLR genes deviating from a strictly neutral model among divergent species. As a first step toward determining whether naturally occurring bovine TLR variation is likely to be benign, beneficial, or detrimental, we tested validated variation from bovine TLR genes capable of recognizing components of Mycobacteria for associations with Mycobacterium avium subspecies paratuberculosis (MAP) infection in dairy cattle, and found several SNPs that were nominally associated with disease status, thereby providing evidence for small-effect loci potentially influencing risk for differential susceptibility to Johne's disease.Item Membrane remodeling in epsilon proteobacteria and its impact on pathogenesis(2012-05) Cullen, Thomas Wilson; Trent, Michael Stephen; Whiteley, Marvin; Harshey, Rasika M.; Stevens, Scott W.; O'Halloran, Terry J.Bacterial pathogens assemble complex surface structures in an attempt to circumvent host immune detection. A great example is the glycolipid known as lipopolysaccharide or lipooligosaccharide (LPS), the major surface molecule in nearly all gram-negative organisms. LPS is anchored to the bacterial cell surface by a anionic hydrophobic lipid known as lipid A, the major agonist of the mammalian TLR4-MD2 receptor and likely target for cationic antimicrobial peptides (CAMPs) secreted by host cells (i.e. defensins). In this work we investigate LPS modification machinery in related ε-proteobacteria, Helicobacter pylori and Campylobacter jejuni, two important human pathogens, and demonstrate that enzymes involved in LPS modification not only play a role in evasion of host defenses but also an unexpected role in bacterial locomotion. More specifically, we identify the enzyme responsible for 4'-dephosphorylation of H. pylori lipid A, LpxF. Demonstrating that lipid A depohsphorylation at the 1 and 4'-positions by LpxE and LpxF, respectively, are the primary mechanisms used by H. pylori for CAMP resistance, contribute to attenuated TRL4-MD2 activation and are required for colonization of a the gastric mucosa in murine host. Similarly in C. jejuni, we identify an enzyme, EptC, responsible for modification of lipid A at both the 1 and 4'-positions with phosphoethanolamine (pEtN), also required for CAMP resistance in this organism. Suprisingly, EptC was found to serve a dual role in modifying not only lipid A with pEtN but also the flagellar rod protein FlgG at residue Thr75, required for motility and efficient flagella production. This work links membrane biogenesis with flagella assembly, both shown to be required for colonization of a host and adds to a growing list of post-translational modifications found in prokaryotes. Understanding how pathogens evade immune detection, interphase with the surrounding environment and assemble major surface features is key in the development of novel treatments and vaccines.Item Structural study of polyglutamine and molecular mechanism of toll-like receptor signaling(2009-05-15) Liu, ZhuyunHuntington?s disease (HD) is caused by the expansion of a CAG repeats encoding polyglutamine (polyQ) in the first exon of Huntingtin (Htt) gene. In HD patients, polyQ contains 36-183 glutamine residues, whereas normal individuals have a polyQ of only 8-35 residues. To elucidate this threshold phenomenon of polyQ aggregation, fluorescence proteins CFP and YFP were attached to both ends of polyQ of different lengths. FRET (fluorescence resonance energy transfer) was conducted to characterize the conformation of polyQ in the pre-aggregation state. Our FRET data show that both the normal and expanded polyQ tracts reveal the same extended structure in low concentration. Longer polyQ has multiple cooperative binding sites with higher avidity. PolyQ tracts form aggregates when proteins exceed a critical concentration. The antibody MW1 Fv fragment binds to polyQ, breaks apart polyQ oligomer and stabilizes it in a more extended conformation. The addition of polyproline to the C-terminus inhibits polyQ aggregation by inducing PPII-like Helix structure. To understand how the flanking sequence affects the polyQ structure, the structure of Q10P10 peptide in complex with MW1 Fv was determined by protein crystallography and compared with Q10/Fv crystal structure. Q10P10 peptide bound to Fv has a similar extended structure as Q10 peptide when a polyproline tract adopts PPII helical structure sticking out of the complex. Toll-like receptors are transmembrane receptors on different kinds of leukocytes. They can recognize the structural conserved molecular motifs derived from microbes. On the upstream of the TLR signal pathway, TLRs recruit the adaptor protein-MyD88 through TIR/TIR domain interaction, and MyD88 recruits the downstream kinases IRAK4 and IRAK1 through death domain/death domain interaction. Pellino1, a newly identified E3 ubiquitin ligase, is also involved in TLR signaling by adding polyubiquitin chain to IRAK1 in conjugation with Ubc13/Uev1a E2 complex. TIR/TIR and DD/DD binding motifs were studied with techniques including mutagenesis, analytical gel filtration, NMR spectroscopy and crystallography. We identified a MyD88DD (E52QR62S) double-mutant that attenuates protein aggregation without interrupting the binding with IRAK4. This double mutant is a good candidate for structure determination by NMR spectroscopy. Our ubiquitination assay showed Pellino1 catalyzes polyubiquitination in the presence of Ubc13/Uev1a in vitro. Needle cluster-shaped crystals of Pellino1/Ubc13/ Uev1a protein complex were obtained by ?hanging drop? method of vapor diffusion. Once the crystallization conditions are optimized, we will be able to collect X-ray diffraction data for this E2/E3 complex.