Browsing by Subject "PFK"
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Item A Structural and Kinetic Study into the Role of the Quaternary Shift in Bacillus stearothermophilus Phosphofructokinase(2011-10-21) Mosser, Rockann ElizabethBacillus stearothermophilus phosphofructokinase (BsPFK) is a homotetramer that is allosterically inhibited by phosphoenolpyruvate (PEP), which binds along one dimer-dimer interface. The substrate, fructose-6-phosphate (F6P), binds along the other dimer-dimer interface. The different functional forms BsPFK can take when in the presence of F6P and PEP can be described by the following diproportionation equilibrium: XE + EA <--> XEA + E where XE is the enzyme bound to PEP, EA is the enzyme bound to F6P, E represents the apo enzyme, and XEA is the ternary complex formed when both substrate and inhibitor are bound. Currently in the Protein Data Bank (PDB) there are two relevant forms of wild-type BsPFK, the EA form and the X'E form, which represents the enzyme bound to the PEP analog, phosphoglycolate (PGA). When comparing the EA and the X'E structures, a 7? rotation about the substrate-binding interface is observed and is termed the quaternary shift. The current study uses methyl TROSY NMR to examine the different liganded states of BsPFK, and for the first time structural data for the XEA species is shown. In addition, crystallography was used to obtain the first apo structure of BsPFK. To distinguish between changes associated with the quaternary shift and those associated with the intra-subunit tertiary changes, the variant D12A BsPFK was studied using kinetics, crystallography, and NMR. Crystal structures of apo and PEP bound forms of D12A BsPFK both indicate a shifted structure similar to the X'E form of wild-type. Kinetic studies of D12A BsPFK, when compared to wild-type, show a 50-fold diminished F6P binding affinity, 100-fold enhanced binding affinity, and a similar coupling constant. A conserved hydrogen bond between D12 and T156 takes place across the substrate binding interface in the EA form of BsPFK. The variant T156A BsPFK shows similar binding, coupling, and structural characteristics to D12A BsPFK. PEP still inhibits these variants of BsPFK despite the fact that the enzymes are in the quaternary shifted position prior to PEP binding. Therefore the quaternary shift of BsPFK primarily perturbs ligand binding but does not directly contribute to heterotropic allosteric inhibition.Item Postmortem regulation of glycolysis by 6-phosphofructokinase in bovine muscle(Texas A&M University, 2004-11-15) Rhoades, Ryan D.This study was conducted to assess the regulation of glycolysis by 6phosphofructokinase (PFK) during the postmortem metabolism of beef muscle. In the first experiment, M. sternocephalicus pars mandibularis samples were excised from six randomly-selected steers. Two samples were obtained from each steer immediately postmortem; one sample was quickly immersed in liquid nitrogen and the other was stored at 4oC for 4 d. Glycogen concentrations decreased 45% from d 0 to d 4, and 39.6 ?mol/g of glycogen was still present in the tissue at d 4. Concentrations of free glucose increased (P < 0.001) from 0.84 ?mol/g at d 0 to 6.54 ?mol/g at d 4. Fructose-6-phosphate (F6P) and glucose-6-phosphate (G6P) increased (P < 0.001) from d 0 to d 4 (2.8-fold and 4.7-fold, respectively). Lactate began accumulating immediately (3.33 ?mol/g) and was elevated to 45.9 ?mol/g by d 4. Glycolytic potential was 34.4 ?mol/g higher (P < 0.05) when measured at d 0 than at d 4. The greatest activity of PFK was measured in fresh muscle extracts, between pH 7.4-7.8; by reducing the pH to 7.0, PFK activity was depressed by nearly 50% at 1 mM F6P. In a second experiment, M. longissimus lumborum samples were excised at the 13th thoracic rib location from six randomly-selected steers. Samples were obtained at intervals ranging from 40 min to 24 h postmortem. Glycogen concentrations decreased 45% between 40 and 100 min, and tended (P ≤ 0.10) to decrease between 100 min and 24 h (from 47 to 32 ?mol/g). Concentrations of free glucose increased (P ≤ 0.009) from 1.0 ?mol/g at 40 min to 5.0 ?mol/g at 24 h. Concentrations of F6P and G6P increased dramatically after 100 min (muscle pH ≤ 6.5), whereas glycogen depletion appeared to halt by 100 min. Lactate began accumulating almost immediately and tripled in concentration by 24 h. The elevation of G6P and F6P, coupled with the pH sensitivity of PFK, indicate that the postmortem decline in pH ultimately inactivates PFK prior to glycogen depletion.