Browsing by Subject "Electron microscopy"
Now showing 1 - 8 of 8
Results Per Page
Sort Options
Item Attachment of Salmonella on cantaloupe and effect of electron beam irradiation on quality and safety of sliced cantaloupe(Texas A&M University, 2006-04-12) Palekar, Mangesh PrafullIncrease in consumption of fresh produce over the past decade has resulted in a rise in incidents of foodborne outbreaks due to pathogens. Chemical sanitizers have been extensively used in the industry for decontamination of fresh produce. However, they are ineffective in certain commodities and under certain processing conditions, necessitating the evaluation of alternative technologies. Electron beam irradiated sliced cantaloupe were tested for 21 days of storage for total aerobic bacterial counts, texture, color and sensory parameters as a function of irradiation doses 0, 0.7 and 1.4 kGy and the wash treatments, water and 200 mg/L chlorine applied to the melons before cutting. Melons washed only with water prior to cutting had total aerobic bacterial counts of 4.0, 2.0 and 0.8 log cfu/g on day 0 at irradiation doses of 0, 0.7 and 1.4 kGy respectively. On day 0, melons washed with chlorine prior to cutting had total aerobic bacterial counts of 2.7, and 0.7 log cfu/g at irradiation doses of 0 and 0.7 kGy and below detection limit at 1.4 kGy. Texture measured as compression force was lower only for cantaloupe irradiated at 1.4 kGy. Irradiation did not affect objective color and descriptive attribute flavor and texture sensory attributes of cantaloupe. Irradiation reduced Salmonella Poona by 1.1 log cfu/g at 0.7 kGy and 3.6 log cfu/g at 1.5 kGy. The D-value of S. Poona on irradiated sliced cantaloupe was found to be 0.211 kGy. Among the spoilage organisms, lactic acid bacteria and mold were reduced effectively by irradiation but there was no significant effect on reduction of yeasts. Our results show that electron beam irradiation in combination with chemical sanitizers is effective in decontamination of fresh-cut produce. Electron microscopy images provided valuable information on attachment sites of S. Poona on cantaloupe rind. The ineffectiveness of chemical sanitizers due to possible inaccessibility to pathogens in these attachment sites provides the basis for application of irradiation in decontamination of fresh produce.Item Coordinated structural plasticity across synapses in the adult hippocampus(2015-05) Chirillo, Michael August; Harris, Kristen M.; Bear, Mark F; Colgin, Laura L; Golding, Nace L; Raab-Graham, Kimberly FNeural circuitry is determined primarily by trillions of synaptic junctions that link cells in the nervous system. Understanding how the structure of the synapse influences its function has been a central goal of cellular neuroscience since synapses were first recognized more than a century ago. Long-term potentiation (LTP), a long lasting enhancement of synaptic efficacy, is a well-characterized cellular correlate of learning and memory that results in dramatic structural remodeling of the synapse. Research has focused heavily on the postsynaptic structural remodeling that occurs to support LTP, but concomitant presynaptic and subcellular remodeling during LTP has been left largely unexplored. To address these questions, three-dimensional reconstructions from serial section electron microscopy of presynaptic boutons, vesicle pools, and dendritic smooth endoplasmic reticulum (SER) in hippocampal area CA1 were created and quantified. The data presented in this dissertation demonstrate that coordinated structural plasticity occurs at both pre- and postsynaptic sides of adult hippocampal synapses by 2 hours during LTP induced with theta burst stimulation. Presynaptically, the number of presynaptic boutons correlated perfectly with fewer dendritic spines during LTP that were previously reported, suggesting that synaptic units act as cohesive structures. Vesicle pools were mobilized and vesicle transport packets were moved into boutons or were released in transit. Dendritic SER is a ubiquitous intracellular membranous network involved in calcium signaling and protein modification. The complexity of SER influences the movement of diffusible membrane cargo. SER was dramatically remodeled during LTP, redistributing from the shaft of the dendrite into spines and becoming highly complex near synapses that were largest during LTP. As a preliminary investigation into how normal mechanisms of structural plasticity described in this dissertation might go awry under conditions of synaptic pathology, three-dimensional reconstructions of CA1 synaptic ultrastructure in a mouse model of Fragile X, which is known to express exaggerated mGluR-dependent long-term depression (LTD), were created and quantified. Synaptic ultrastructure was similar with that of the wild-type mouse, suggesting that structural malformation in FX might be confined to development or to other brain regions.Item Differential Effects of Androgens on the Morphlogy of Guinea Pig Seminal Vesicle Epithelia(Texas Tech University, 1979-08) Robinson, Susan ClaireScanning and transmission electron microscopic observations of uncastrated, castrated, testosterone proprionate and 5a-androstane- 3a-176-diol treated guinea pigs suggested a differential hormone replacement effect on the morphology of the seminal vesicle epithelium. The lumenal surface, cytoplasmic volume, organelle volume, and cellular structure of the seminal vesicles changed radically following castration. This study showed that microvilli were maintained by the cells following orchiectomy, although the microvilli were essentially confined to peripheral cell surfaces. After commencement of androgen / supplementation to castrate guinea pigs, studies of tissue samples ^ provided examples of distinct cytological responses. Analysis of the / / tissues following treatment indicated that both hormones stimulated I the return of microvilli to the lumenal surface and increased cellular volume. However, the epithelium exhibited a greater response to \ 5a-androstane-3a-173-diol than to testosterone proprionate as verified by stereological analysis.Item Estimating the effects of lens distortion on serial section electron microscopy images(2012-08) Lindsey, Laurence Francis; Harris, Kristen M.; Bovik, Alan C. (Alan Conrad), 1958-Section to section alignment is a preliminary step to the creation of three dimensional reconstructions from serial section electron micrographs. Typically, the micrograph of one section is aligned to its neighbors by analyzing a set of fiducial points to calculate an appropriate polynomial transform. This transform is then used to map all of the pixels of the micrograph into alignment. Such transforms are usually linear or piecewise linear in order to limit the accumulation of small errors, which may occur with the use of higher–order approximations. Linear alignment is unable to correct common higher order geometric distortions, such as lens distortion in the case of TEM, and scan distortion in the case of transmission-mode SEM. Here, we attempt to show that standard calibration replicas may be used to calculate a high order distortion model despite the irregularities that are often present in them. We show that SEM scan distortion has much less of an effect than TEM lens distortion; however, the effect of TEM distortion on prior geometric measurements made over three-dimensional reconstructions of dendrites, axons, and synapses and their subcellular compartments is negligible.Item Feature modeling and tomographic reconstruction of electron microscopy images(2012-05) Gopinath, Ajay, 1980-; Bovik, Alan C. (Alan Conrad), 1958-; Ress, David Bruce; Xu, Guoliang; Pearce, John; Ghosh, JoydeepThis work introduces a combination of image processing and analysis methods that perform feature extraction, shape analysis and tomographic reconstruction of Electron Microscopy images. These have been implemented on images of the AIDS virus interacting with neutralizing molecules. The AIDS virus spike is the primary target of drug design as it is directly involved in infecting host cells. First, a fully automated technique is introduced that can extract sub-volumes of the AIDS virus spike and be used to build a statistical model without the need for any user supervision. Such an automatic feature extraction method can significantly enhance the overall process of shape analysis of the AIDS virus spike imaged through the electron microscope. Accurate models of the virus spike will help in the development of better drug design strategies. Secondly, a tomographic reconstruction method implemented using a shape based regularization technique is introduced. Spatial models of known features in the structure being reconstructed are integrated into the reconstruction process as regularizers. This regularization scheme is driven locally through shape information obtained from segmentation and compared with a known spatial model. This method shows reduced blurring, and an improvement in the resolution of the reconstructed volume was also measured. It performs better than popular current techniques and can be extended to other tomographic modalities. Improved Electron Tomography reconstructions will provide better structure elucidation and improved feature visualization, which can aid in solving key biological issues.Item Karyological and scanning electron microscopic studies of the ant genus Pogonomyrmex(Texas Tech University, 1986-08) Taber, Stephen WeltonNot availableItem Probing Iron Accumulation in Sacchromyces cerevisiae Using Integrative Biophysical and Biochemical Techniques(2012-02-14) Miao, RenIron is an essential element for life. It is involved in a number of biological processes, including iron sulfur (Fe/S) cluster assembly and heme biosynthesis. However it is also potentially toxic due to its ability to induce formation of reactive oxygen species (ROS) via Fenton chemistry. Therefore its uptake, trafficking and utilization must be regulated to avoid its toxicological effect. It has been recently discovered that Fe/S cluster biosynthesis machinery plays a key role in the cellular iron regulation and its disruption leads to impaired iron regulation and iron accumulation within mitochondria. The iron accumulation resulted from impaired Fe/S cluster assembly in the eukaryotic model organism Saccharomyces cerevisiae (baker?s yeast) was studied. Various biophysical (e.g. M?ssbauer, EPR, UV-vis spectroscopy) and biochemical (e.g. Western blots, PCR, enzyme activity assay, etc.) techniques were used to characterize the iron content in yeast mitochondria isolated from several mutants strains. In these mutants one of the proteins involved in Fe/S cluster biosynthesis (Yah1p and Atm1p) is mutated and iron regulation and metabolism are disrupted. By integrating the results obtained from these different methods, it was determined that excess iron accumulates in the mutant mitochondria as inorganic phosphate Fe(III) nano-particles exhibiting superparamagnetic behaviors. Oxygen is required for iron accumulation and nanoparticle formation. The Fe(III) nano-particles can be chemically reduced to Fe(II) then largely exported from the mitochondria. These biophysical and biochemical methods were also used to examine the iron distribution in whole yeast cells of the Aft1-1up strain in which iron regulon genes are constitutively activated and compared to that of Yah1p-depleted and wild type yeast. Constitutive activation of iron regulon genes does not alter the cellular iron distribution significantly. However disruption of Fe/S cluster assembly by Yah1p depletion causes dramatic cellular iron redistribution: the vacuolar iron is largely evacuated and most of the cellular iron probably precipitates in mitochondria as Fe(III) nanoparticles. The results provide novel insights into iron trafficking and possible signal communications between organelles within cells.Item Semiconductor nanowires : from a nanoscale system to a macroscopic material(2011-12) Holmberg, Vincent Carl; Korgel, Brian Allan, 1969-Semiconductor nanowires are one-dimensional nanoscale systems that exhibit many unique properties. Their nanoscale size can lead to defect densities and impurity populations different than bulk materials, resulting in altered diffusion behavior and mechanical properties. Synthetic methods now support the large-scale production of semiconductor nanowires, enabling a new class of materials and devices that use macroscopic quantities of nanowires. These advances have created an opportunity to fabricate bulk structures which exhibit the unique physical properties of semiconductor nanowires, bridging the properties of a nanoscale system with macroscopic materials. High aspect ratio germanium nanowires were synthesized in supercritical organic solvents using colloidal gold nanocrystal seeds. The nanowires were chemically passivated inside the reactor system using in situ thermal hydrogermylation and thiolation. The chemical stability of the passivated nanowires was studied by exposure to highly corrosive and oxidative environments. Chemical surface functionalization of germanium nanowires was investigated by covalently tethering carboxylic acid groups to the surface, as a general platform for the further functionalization of nanowire surfaces with molecules such as polyethylene glycol. Surface functionalization with dopant-containing molecules was also explored as a potential route for doping nanowires. In addition, static charging was exploited in the development of an electrostatic deposition method for semiconductor nanowires. In situ transmission electron microscopy experiments were conducted on gold-seeded germanium nanowires encapsulated within a volume-restricting carbon shell. A depressed eutectic melting temperature was observed, along with strong capillary effects, and the solid-state diffusion of gold into the crystalline stem of the germanium nanowire, occurring at rates orders of magnitude slower than in the bulk. Copper, nickel, and gold diffusion in silicon nanowires were also investigated. The rate of gold diffusion was found to be a strong function of the amount of gold available to the system. Finally, germanium nanowires were found to exhibit exceptional mechanical properties, with bending strengths approaching that of an ideal, defect-free, perfect crystal, and strength-to-weight ratios greater than either Kevlar or carbon fiber. Macroscopic quantities of nanowires were used to fabricate large sheets of free-standing semiconductor nanowire fabric, and the physical, morphological, and optical properties of the material were investigated.